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8-K - FORM 8-K - ILLUMINA, INC.a2q128-k.htm


Exhibit 99.1

Illumina Reports Financial Results for Second Quarter of Fiscal Year 2012

SAN DIEGO -- (BUSINESS WIRE) - July 24, 2012 - Illumina, Inc. (NASDAQ:ILMN) today announced its financial results for the second quarter of 2012.

Second quarter 2012 results:
Revenue of $281 million, a 2% decrease compared to $287 million in the second quarter of 2011.
GAAP net income for the quarter of $23 million, or $0.18 per diluted share, compared to net income of $31 million, or $0.22 per diluted share, for the second quarter of 2011.
Non-GAAP net income for the quarter of $53 million, or $0.40 per diluted share, compared to $52 million, or $0.38 per diluted share, for the second quarter of 2011 (see the table entitled "Itemized Reconciliation Between GAAP and Non-GAAP Net Income" for a reconciliation of these GAAP and non-GAAP financial measures).
Cash flow from operations of $96 million compared to cash flow from operations of $71 million for the second quarter of 2011.

Gross margin in the second quarter of 2012 was 68.8% compared to 67.3% in the prior year period. Excluding the effect of non-cash charges associated with stock compensation, amortization of acquired intangibles, and legal contingencies, non-GAAP gross margin was 70.9% for the second quarter of 2012 compared to 69.0% in the prior year period.

Research and development (R&D) expenses for the second quarter of 2012 were $71.2 million compared to $50.8 million in the second quarter of 2011. R&D expenses in the second quarter of 2012 included a one-time charge of $21.4 million related to in-process research and development associated with the impairment of an early-stage technology acquired in 2010 as well as $7.7 million and $8.5 million of non-cash stock compensation expense in the second quarters of 2012 and 2011, respectively. Excluding these charges and contingent compensation, R&D expenses as a percentage of revenue were 14.7% compared to 14.1% in the prior year period.

Selling, general and administrative (SG&A) expenses for the second quarter of 2012 were $68.5 million compared to $69.2 million for the second quarter of 2011. SG&A expenses included $14.3 million and $13.3 million of non-cash stock compensation expense in the second quarters of 2012 and 2011, respectively. Excluding these charges, contingent compensation, and acquired intangible asset amortization, SG&A expenses as a percentage of revenue were 19.4% compared to 19.1% in the prior year period.

Depreciation and amortization expenses were $14.7 million and capital expenditures were $20.9 million during the second quarter of 2012. The company ended the second quarter of 2012 with $1.3 billion in cash, cash equivalents and short-term investments compared to $1.2 billion as of January 1, 2012.






Highlights since our last earnings release
Announced BaseSpace Apps, a dedicated application store allowing customers to access a growing community of academic, commercial, and open source applications that simplify and accelerate the analysis of genomic data.
Announced BaseSpace pricing for both data storage and downstream analysis.
Launched the MyGenome application for the iPad®, empowering users to explore a real human genome and view reports about important genetic variation through a simple, intuitive, and educational interface.
Launched the real-time PCR reagent portfolio compatible with any real-time PCR platform, including a novel, probe-based chemistry for gene expression analysis called NūPCR as well as qPCR DNA Binding Dye (DBD) Assays for gene expression analysis and qPCR High Resolution Melting (HRM) Assays for genotyping studies.
Launched Nextera XT DNA Sample Preparation kits, which support both the MiSeq and HiSeq sequencing platforms, allowing researchers the easiest and fastest way to prepare and sequence small genomes, PCR amplicons, and plasmids.
Launched Nextera Exome and Custom Enrichment Sample Preparation kits, allowing researchers to quickly and economically perform a wide range of studies - from small, focused gene panels to full human exomes with the lowest DNA sample input requirements (50ng).
Launched the RapidTrack Whole Genome Sequencing Service, which delivers the fastest sample-to-data turnaround time of any commercially available whole human genome sequencing service.
Announced that the Cold Spring Harbor Laboratory joined the Illumina Genome Network.
Announced that the Queensland Centre for Medical Genomics will replace their fleet of SOLiD/5500 systems with three Illumina HiSeq 2500 systems.
Announced the iSAAC genome alignment tool that maps sequencing reads to their proper location up to 10 times faster than existing aligners, significantly expediting and simplifying a critical component in data analysis.
Repurchased $32 million of common stock under our previously announced discretionary stock repurchase program.

Financial outlook and guidance

"We are very pleased with our operational execution for the first half of 2012 and the resulting financial performance," said Jay Flatley, President and Chief Executive Officer. "While some uncertainty exists with respect to academic and research funding in the second half of the year, our outlook is generally as we anticipated. Accordingly, we are re-affirming our 2012 revenue guidance and increasing our non-GAAP earnings per fully diluted share guidance to between $1.50 - $1.60 (previously $1.40 - $1.50)."






Quarterly conference call information

The conference call will begin at 2:00 pm Pacific Time (5:00 pm Eastern Time) on Tuesday, July 24, 2012. Interested parties may listen to the call by dialing 888-680-0890 (passcode: 97408950), or if outside North America by dialing +1-617-213-4857 (passcode: 97408950). Individuals may access the live teleconference in the Investor Relations section of Illumina's web site under the “Company” tab at www.illumina.com.

A replay of the conference call will be available from 4:00 pm Pacific Time (7:00 pm Eastern Time) on July 24, 2012 through July 31, 2012 by dialing 888-286-8010 (passcode: 51099189), or if outside North America by dialing +1-617-801-6888 (passcode: 51099189).

Statement regarding use of non-GAAP financial measures

The company reports non-GAAP results for diluted net income per share, net income, gross margins, operating expenses, operating margins, other income, and free cash flow in addition to, and not as a substitute for, or superior to, financial measures calculated in accordance with GAAP.

The company's financial measures under GAAP include substantial charges related to stock compensation expense, non-cash interest expense associated with the company's convertible debt instruments that may be settled in cash, costs related to unsolicited tender offer for the company's stock, amortization expense related to acquired intangible assets, contingent compensation expense, restructuring charges, legal contingencies, headquarter relocation expense, loss on the extinguishment of convertible debt, impairment of in-process research and development, and acquisition related expense. Per share amounts also include the double dilution associated with the accounting treatment of the company's 0.625% convertible senior notes outstanding and the corresponding call option overlay. Management believes that presentation of operating results that excludes these items and per share double dilution provides useful supplemental information to investors and facilitates the analysis of the company's core operating results and comparison of operating results across reporting periods. Management also believes that this supplemental non-GAAP information is therefore useful to investors in analyzing and assessing the company's past and future operating performance.

The company encourages investors to carefully consider its results under GAAP, as well as its supplemental non-GAAP information and the reconciliation between these presentations, to more fully understand its business. Reconciliations between GAAP and non-GAAP results are presented in the tables of this release.

Use of forward-looking statements

This release contains projections, information about our financial outlook, earnings guidance, and other forward-looking statements that involve risks and uncertainties. These forward-looking statements are based





on our expectations as of the date of this release and may differ materially from actual future events or results. Among the important factors that could cause actual results to differ materially from those in any forward-looking statements are (i) our ability to develop and commercialize further our sequencing, array, PCR, and consumables technologies and to deploy new products and applications, and expand the markets, for our technology platforms; (ii) our ability to manufacture robust instrumentation and consumables; (iii) our expectations and beliefs regarding future conduct and growth of the business and the markets in which we operate; (iv) challenges inherent in developing, manufacturing, and launching new products and services; (v) our ability to maintain our revenue and profitability during periods of research funding reduction or uncertainty and adverse economic and business conditions, including as a result of slowing economic growth in the United States or worldwide, together with other factors detailed in our filings with the Securities and Exchange Commission, including our most recent filings on Forms 10-K and 10-Q, or in information disclosed in public conference calls, the date and time of which are released beforehand. We undertake no obligation, and do not intend, to update these forward-looking statements, to review or confirm analysts' expectations, or to provide interim reports or updates on the progress of the current financial quarter.

About Illumina

Illumina (www.illumina.com) is a leading developer, manufacturer, and marketer of life science tools and integrated systems for the analysis of genetic variation and function. We provide innovative sequencing and array-based solutions for genotyping, copy number variation analysis, methylation studies, gene expression profiling, and low-multiplex analysis of DNA, RNA, and protein. We also provide tools and services that are fueling advances in consumer genomics and diagnostics. Our technology and products accelerate genetic analysis research and its applications, paving the way for molecular medicine and ultimately transforming healthcare.


# # #

Investors:
Kevin Williams, MD
Investor Relations
858-332-4989
kwilliams@illumina.com
or
Media:
Jennifer Temple
Public Relations
858-246-8816
PR@illumina.com






Illumina, Inc.
Condensed Consolidated Balance Sheets
(In thousands)
 
 
 
 
 
 
 
July 1,
2012
 
January 1,
2012
ASSETS
(unaudited)
 
 
Current assets:
 
 
 
 
Cash and cash equivalents
$
316,412

 
$
302,978

 
Short-term investments
985,274

 
886,590

 
Accounts receivable, net
188,562

 
173,886

 
Inventory, net
133,844

 
128,781

 
Deferred tax assets, current portion
23,914

 
23,188

 
Prepaid expenses and other current assets
16,366

 
29,196

 
          Total current assets
1,664,372

 
1,544,619

Property and equipment, net
147,917

 
143,483

Goodwill
321,853

 
321,853

Intangible assets, net
89,007

 
106,475

Deferred tax assets, long-term portion
48,859

 
19,675

Other assets
76,730

 
59,735

 
          Total assets
$
2,348,738

 
$
2,195,840

 
 
 
 
 
LIABILITIES AND STOCKHOLDERS’ EQUITY
Current liabilities:
 
 
 
 
Accounts payable
$
56,668

 
$
49,806

 
Accrued liabilities
206,813

 
177,115

 
Long-term debt, current portion
35,660

 

 
          Total current liabilities
299,141

 
226,921

Long-term debt
789,008

 
807,369

Other long-term liabilities
75,341

 
80,613

Conversion option subject to cash settlement
4,465

 
5,722

Stockholders’ equity
1,180,783

 
1,075,215

 
          Total liabilities and stockholders’ equity
$
2,348,738

 
$
2,195,840








Illumina, Inc.
Condensed Consolidated Statements of Income
(In thousands, except per share amounts)
(unaudited)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Three Months Ended
 
Six Months Ended
 
 
 
 
 
 
July 1,
2012
 
July 3,
2011
 
July 1,
2012
 
July 3,
2011
 
Revenue:
 
 
 
 
 
 
 
 
 
 
Product revenue
 
$
258,839

 
$
269,871

 
$
514,475

 
$
536,588

 
 
Service and other revenue
 
21,768

 
17,579

 
38,902

 
33,377

 
 
 
Total revenue
 
280,607

 
287,450

 
553,377

 
569,965

 
Cost of Revenue:
 
 
 
 
 
 
 
 
 
 
Cost of product revenue (a)
 
74,911

 
84,518

 
155,062

 
169,955

 
 
Cost of service and other revenue (a)
 
9,656

 
6,541

 
18,221

 
12,593

 
 
Amortization of acquired intangible assets
 
3,043

 
3,035

 
6,086

 
6,020

 
 
 
Total cost of revenue
 
87,610

 
94,094

 
179,369

 
188,568

 
 
 
 
Gross profit
 
192,997

 
193,356

 
374,008

 
381,397

 
Operating Expenses:
 
 
 
 
 
 
 
 
 
 
Research and development (a)
 
71,223

 
50,801

 
120,062

 
101,001

 
 
Selling, general and administrative (a)
 
68,516

 
69,233

 
136,485

 
134,894

 
 
Unsolicited tender offer related expense
 
6,694

 

 
14,786

 

 
 
Restructuring charges
 
674

 

 
3,296

 

 
 
Headquarter relocation expense
 
1,830

 
2,542

 
3,970

 
5,064

 
 
Acquisition related expense, net
 
1,080

 
4,770

 
2,817

 
5,040

 
 
 
Total operating expenses
 
150,017

 
127,346

 
281,416

 
245,999

 
 
 
 
Income from operations
 
42,980

 
66,010

 
92,592

 
135,398

 
 
Other expense, net
 
(8,193
)
 
(16,986
)
 
(17,532
)
 
(50,366
)
 
 
 
 
Income before income taxes
 
34,787

 
49,024

 
75,060

 
85,032

 
Provision for income taxes
 
11,386

 
18,404

 
25,457

 
30,275

 
 
 
 
Net income
 
$
23,401

 
$
30,620

 
$
49,603

 
$
54,757

 
Net income per basic share
 
$
0.19

 
$
0.25

 
$
0.40

 
$
0.44

 
Net income per diluted share
 
$
0.18

 
$
0.22

 
$
0.37

 
$
0.37

 
Shares used in calculating basic net income per share
 
123,214

 
123,456

 
122,928

 
124,987

 
Shares used in calculating diluted net income per share
 
133,011

 
141,765

 
133,435

 
147,447

 
 
 
 
 
 
 
 
 
 
 
 
 
 
(a) Includes total stock-based compensation expense for stock based awards:
 
 
 
 
 
 
Three Months Ended
 
Six Months Ended
 
 
 
 
 
 
July 1,
2012
 
July 3,
2011
 
July 1,
2012
 
July 3,
2011
 
 
Cost of product revenue
 
$
1,844

 
$
1,800

 
$
3,656

 
$
3,312

 
 
Cost of service and other revenue
 
168

 
132

 
185

 
342

 
 
Research and development
 
7,687

 
8,461

 
15,114

 
16,188

 
 
Selling, general and administrative
 
14,348

 
13,273

 
28,121

 
25,863

 
 
 
Stock-based compensation expense before taxes
 
$
24,047

 
$
23,666

 
$
47,076

 
$
45,705

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 







Illumina, Inc.
Condensed Consolidated Statements of Cash Flows
(In thousands)
(unaudited)
 
 
 
 
 
 
 
 
 
 
Three Months Ended
 
Six Months Ended
 
 
July 1,
2012
 
July 3,
2011
 
July 1,
2012
 
July 3,
2011
 
Net cash provided by operating activities
$
96,329

 
$
71,220

 
$
161,769

 
$
159,798

 
Net cash used in investing activities
(9,648
)
 
(272,264
)
 
(151,518
)
 
(425,140
)
 
Net cash (used in) provided by financing activities
(30,264
)
 
51,517

 
3,352

 
276,998

 
Effect of exchange rate changes on cash and cash equivalents
(199
)
 
270

 
(169
)
 
481

 
Net increase (decrease) in cash and cash equivalents
56,218

 
(149,257
)
 
13,434

 
12,137

 
Cash and cash equivalents, beginning of period
260,194

 
410,341

 
302,978

 
248,947

 
Cash and cash equivalents, end of period
$
316,412

 
$
261,084

 
$
316,412

 
$
261,084

 
 
 
 
 
 
 
 
 
 
Calculation of free cash flow (a):
 
 
 
 
 
 
 
 
Net cash provided by operating activities
$
96,329

 
$
71,220

 
$
161,769

 
$
159,798

 
Purchases of property and equipment
(20,946
)
 
(16,203
)
 
(34,030
)
 
(28,503
)
 
Free cash flow
$
75,383

 
$
55,017

 
$
127,739

 
$
131,295

 
 
 
 
 
 
 
 
 
 

(a) Free cash flow, which is a non-GAAP financial measure, is calculated as net cash provided by operating activities reduced by purchases of property and equipment. Free cash flow is useful to management as it is one of the metrics used to evaluate our performance and to compare us with other companies in our industry. However, our calculation of free cash flow may not be comparable to similar measures used by other companies.







Illumina, Inc.
Results of Operations - Non-GAAP
(In thousands, except per share amounts)
(unaudited)
 
 
 
 
 
ITEMIZED RECONCILIATION BETWEEN GAAP AND NON-GAAP NET INCOME PER SHARE:
 
 
 
 
 
 
 
 
 
 
Three Months Ended
 
Six Months Ended
 
 
July 1,
2012
 
July 3,
2011
 
July 1,
2012
 
July 3,
2011
 
GAAP net income per share - diluted
$
0.18

 
$
0.22

 
$
0.37

 
$
0.37

 
Pro forma impact of weighted average shares (a)

 
0.01

 
0.03

 
0.03

 
Adjustments to net income:
 
 
 
 
 
 
 
 
Impairment of in-process research and development
0.16

 

 
0.16

 

 
Non-cash interest expense (b)
0.07

 
0.06

 
0.13

 
0.10

 
Unsolicited tender offer related charges
0.05

 

 
0.11

 

 
Amortization of acquired intangible assets
0.02

 
0.02

 
0.05

 
0.04

 
Headquarter relocation expense (c)
0.01

 
0.02

 
0.03

 
0.04

 
Acquisition related expense, net (d)
0.01

 
0.03

 
0.02

 
0.04

 
Legal contingencies
0.01

 

 
0.02

 

 
Restructuring charges
0.01

 

 
0.02

 

 
Contingent compensation expense (e)

 
0.02

 
0.02

 
0.03

 
Loss on extinguishment of debt

 
0.07

 

 
0.26

 
Incremental non-GAAP tax expense (f)
(0.12
)
 
(0.07
)
 
(0.20
)
 
(0.18
)
 
Non-GAAP net income per share - diluted (g)
$
0.40

 
$
0.38

 
$
0.76

 
$
0.73

 
Shares used in calculating non-GAAP diluted net income per share
132,086

 
139,357

 
132,477

 
140,767

 
 
 
 
 
 
 
 
 
 
ITEMIZED RECONCILIATION BETWEEN GAAP AND NON-GAAP NET INCOME:
GAAP net income
$
23,401

 
$
30,620

 
$
49,603

 
$
54,757

 
Impairment of in-process research and development
21,438

 

 
21,438

 

 
Non-cash interest expense (b)
8,743

 
8,252

 
17,385

 
14,753

 
Unsolicited tender offer related charges
6,694

 

 
14,786

 

 
Amortization of acquired intangible assets
3,195

 
3,328

 
6,390

 
6,313

 
Headquarter relocation expense (c)
1,830

 
2,542

 
3,970

 
5,064

 
Acquisition related expense, net (d)
1,080

 
4,770

 
2,817

 
5,040

 
Legal contingencies
797

 

 
3,020

 

 
Restructuring charges
674

 

 
3,296

 

 
Contingent compensation expense (e)
216

 
2,706

 
3,308

 
4,830

 
Loss on extinguishment of debt

 
9,679

 

 
36,856

 
Incremental non-GAAP tax expense (f)
(15,495
)
 
(9,407
)
 
(25,888
)
 
(24,856
)
 
Non-GAAP net income (g)
$
52,573

 
$
52,490

 
$
100,125

 
$
102,757

 
 
 
 
 
 
 
 
 
 
ITEMIZED RECONCILIATION BETWEEN GAAP AND NON-GAAP DILUTED NUMBER OF SHARES:
Weighted average shares used in calculation of GAAP diluted net income per share
133,011

 
141,765

 
133,435

 
147,447

 
Weighted average dilutive potential common shares issuable of redeemable convertible senior notes (a)
(925
)
 
(2,408
)
 
(958
)
 
(6,680
)
 
Weighted average shares used in calculation of Non-GAAP diluted net income per share
132,086

 
139,357

 
132,477

 
140,767

 
 
 
 
 
 
 
 
 
 

(a) Pro forma impact of weighted average shares represents the impact of double dilution associated with the accounting treatment of the company's outstanding convertible debt and the corresponding call option overlay.

(b) Non-cash interest expense is calculated in accordance with the authoritative accounting guidance for convertible debt instruments that may be settled in cash.

(c) Headquarter relocation expense in Q2 2012 and first half of 2012 consists primarily of double rent expense during the transition to our new headquarter facility, accretion of interest expense on lease exit liability recorded upon vacating certain buildings of our prior headquarters, and moving costs. Headquarter relocation expense recorded in Q2 2011 and first half of 2011 consisted of accelerated depreciation.

(d) Acquisition related expense, net in Q2 and first half of 2012 year represents changes in fair value of contingent consideration. Acquisition related expense, net in Q2 and first half of 2011 includes an acquired in-process research and development charge of $5.4 million in Q2 2011 related to a milestone payment for a prior acquisition, offset by a loss of $0.3 million in Q1 2011 and a gain of $0.7 million in Q2 2011 recorded for changes in fair value of contingent consideration.

(e) Contingent compensation expense represents contingent consideration for post-combination services associated with acquisitions.

(f) Incremental non-GAAP tax expense reflects the increase to GAAP tax expense related to the non-GAAP adjustments listed above.

(g) Non-GAAP net income per share and net income exclude the effect of the pro forma adjustments as detailed above. Non-GAAP diluted net income per share and net income are key drivers of our core operating performance and major factors in management's bonus compensation each year. Management has excluded the effects of these items in these measures to assist investors in analyzing and assessing our past and future core operating performance.







Illumina, Inc.
Results of Operations - Non-GAAP (continued)
(Dollars in thousands)
(unaudited)
ITEMIZED RECONCILIATION BETWEEN GAAP AND NON-GAAP RESULTS OF OPERATIONS AS A PERCENT OF REVENUE:
 
Three Months Ended
Six Months Ended
 
 
July 1,
2012
 
July 3,
2011
 
July 1,
2012
 
July 3,
2011
 
GAAP gross profit
$
192,997

 
68.8
%
 
$
193,356

 
67.3
 %
 
$
374,008

 
67.6
%
 
$
381,397

 
66.9
%
 
Stock-based compensation expense
2,012

 
0.7
%
 
1,932

 
0.7
 %
 
3,841

 
0.7
%
 
3,654

 
0.6
%
 
Amortization of acquired intangible assets
3,043

 
1.1
%
 
3,035

 
1.1
 %
 
6,086

 
1.1
%
 
6,020

 
1.1
%
 
Legal contingencies
797

 
0.3
%
 

 

 
3,020

 
0.5
%
 

 

 
Non-GAAP gross profit
$
198,849

 
70.9
%
 
$
198,323

 
69.0
 %
 
$
386,955

 
69.9
%
 
$
391,071

 
68.6
%
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Research and development expense
$
71,223

 
25.4
%
 
$
50,801

 
17.7
 %
 
$
120,062

 
21.7
%
 
$
101,001

 
17.7
%
 
Stock-based compensation expense
(7,687
)
 
(2.7%)

 
(8,461
)
 
(2.9%)

 
(15,114
)
 
(2.7%)

 
(16,188
)
 
(2.8%)

 
Impairment of in-process research and development
(21,438
)
 
(7.6%)

 

 

 
(21,438
)
 
(3.9%)

 

 

 
Contingent compensation expense (a)
(732
)
 
(0.3%)

 
(1,855
)
 
(0.6%)

 
(1,464
)
 
(0.3%)

 
(3,292
)
 
(0.6%)

 
Non-GAAP research and development expense
$
41,366

 
14.7
%
 
$
40,485

 
14.1
 %
 
$
82,046

 
14.8
%
 
$
81,521

 
14.3
%
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Selling, general and administrative expense
$
68,516

 
24.4
%
 
$
69,233

 
24.1
 %
 
$
136,485

 
24.7
%
 
$
134,894

 
23.7
%
 
Stock-based compensation expense
(14,348
)
 
(5.1%)

 
(13,273
)
 
(4.6%)

 
(28,121
)
 
(5.1%)

 
(25,863
)
 
(4.5%)

 
Amortization of acquired intangible assets
(152
)
 
(0.1%)

 
(293
)
 
(0.1
)%
 
(304
)
 
(0.1%)

 
(293
)
 
(0.1%)

 
Contingent compensation gain (expense) (a)
516

 
0.2
%
 
(851
)
 
(0.3%)

 
(1,844
)
 
(0.3%)

 
(1,538
)
 
(0.3%)

 
Non-GAAP selling, general and administrative expense
$
54,532

 
19.4
%
 
$
54,816

 
19.1
 %
 
$
106,216

 
19.2
%
 
$
107,200

 
18.8
%
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GAAP operating profit
$
42,980

 
15.3
%
 
$
66,010

 
23.0
 %
 
$
92,592

 
16.7
%
 
$
135,398

 
23.8
%
 
Stock-based compensation expense
24,047

 
8.6
%
 
23,666

 
8.2
 %
 
47,076

 
8.5
%
 
45,705

 
8.0
%
 
Impairment of in-process research and development
21,438

 
7.6
%
 

 

 
21,438

 
3.9
%
 

 

 
Unsolicited tender offer related charges
6,694

 
2.4
%
 

 

 
14,786

 
2.7
%
 

 

 
Amortization of acquired intangible assets
3,195

 
1.1
%
 
3,328

 
1.1
 %
 
6,390

 
1.2
%
 
6,313

 
1.1
%
 
Headquarter relocation expense (b)
1,830

 
0.7
%
 
2,542

 
0.9
 %
 
3,970

 
0.7
%
 
5,064

 
0.9
%
 
Acquisition related expense, net (c)
1,080

 
0.4
%
 
4,770

 
1.7
 %
 
2,817

 
0.5
%
 
5,040

 
0.9
%
 
Legal contingencies
797

 
0.3
%
 

 

 
3,020

 
0.5
%
 

 

 
Restructuring charges
674

 
0.2
%
 

 

 
3,296

 
0.6
%
 

 

 
Contingent compensation expense (a)
216

 
0.1
%
 
2,706

 
0.7
 %
 
3,308

 
0.6
%
 
4,830

 
0.8
%
 
Non-GAAP operating profit (d)
$
102,951

 
36.7
%
 
$
103,022

 
35.8
 %
 
$
198,693

 
35.9
%
 
$
202,350

 
35.5
%
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GAAP other expense, net
$
(8,193
)
 
(2.9%)

 
$
(16,986
)
 
(5.9%)

 
$
(17,532
)
 
(3.2%)

 
$
(50,366
)
 
(8.8%)

 
Non-cash interest expense (e)
8,743

 
3.1
%
 
8,252

 
2.9
 %
 
17,385

 
3.1
%
 
14,753

 
2.6
%
 
Loss on extinguishment of debt

 

 
9,679

 
3.4
 %
 

 

 
36,856

 
6.5
%
 
Non-GAAP other income (expense), net (d)
$
550

 
0.2
%
 
$
945

 
0.3
 %
 
$
(147
)
 

 
$
1,243

 
0.2
%
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

(a) Contingent compensation expense represents contingent consideration for post-combination services associated with acquisitions.

(b) Headquarter relocation expense in Q2 2012 and first half of 2012 consists primarily of double rent expense during the transition to our new headquarter facility, accretion of interest expense on lease exit liability recorded upon vacating certain buildings of our prior headquarters, and moving costs. Headquarter relocation expense recorded in Q2 2011 and first half of 2011 consisted of accelerated depreciation.

(c) Acquisition related expense, net in Q2 and first half of 2012 year represents changes in fair value of contingent consideration. Acquisition related expense, net in Q2 and first half of 2011 includes an acquired in-process research and development charge of $5.4 million in Q2 2011 related to a milestone payment for a prior acquisition, offset by a loss of $0.3 million in Q1 2011 and a gain of $0.7 million in Q2 2011 recorded for changes in fair value of contingent consideration.

(d) Non-GAAP operating profit, and non-GAAP other income, net, exclude the effects of the pro forma adjustments as detailed above. Management has excluded the effects of these items in these measures to assist investors in analyzing and assessing our past and future core operating performance. Non-GAAP gross profit, included within the non-GAAP operating profit, is a key measure of the effectiveness and efficiency of our manufacturing processes, product mix and the average selling prices of our products and services.

(e) Non-cash interest expense is calculated in accordance with the authoritative accounting guidance for convertible debt instruments that may be settled in cash.






Illumina, Inc.
Reconciliation of Non-GAAP Financial Guidance


The company's future performance and financial results are subject to risks and uncertainties, and actual results could differ materially from the guidance set forth below. More information on potential factors that could affect the company's financial results is included from time to time in the company's public reports filed with the SEC, including the company's Form 10-K for the fiscal year ended January 1, 2012. The company assumes no obligation to update any forward-looking statements or information.

 
Fiscal Year 2012
Gross Margin
 
Non-GAAP gross margin
70%
Stock-based compensation expense
(1)%
Amortization of acquired intangible assets
(1)%
GAAP gross margin
68%
 
 
Diluted net income per share
 
Non-GAAP diluted net income per share
$1.50 - $1.60
Non-cash interest expense (a)
(0.17)
Headquarter relocation expense (b)
(0.12)
Unsolicited tender offer charges
(0.12)
Impairment of in-process research and development
(0.11)
Amortization of intangible assets
(0.07)
Contingent compensation expense (c)
(0.02)
Restructuring charges
(0.02)
Legal contingencies
(0.02)
Acquisition related expense (d)
(0.01)
Pro forma impact of weighted average shares (e)
(0.01)
GAAP diluted net income per share
$0.83 - $0.93
 
 

(a) Non-cash interest expense is calculated in accordance with the authoritative accounting guidance for convertible debt instruments that may be settled in cash.

(b) We expect to incur additional headquarter relocation expenses, the majority of which are non-cash in nature. These expenses include items such as additional cease-use loss upon vacating our former headquarter facilities, accretion of interest expense on such cease-use liabilities, and double rent expense during the transition to the new facility.

(c) Contingent compensation expense represents contingent consideration for post-combination services associated with acquisitions.

(d) Acquisition related expense represents changes in fair value of contingent consideration.

(e) Pro forma impact of weighted average shares represents the estimated impact of double dilution associated with the accounting treatment of the company's outstanding convertible debt and the corresponding call option overlay.