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UNITED STATES
SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549


FORM 10-Q


(Mark One)

       [X]     Quarterly Report Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934

                 For the quarterly period ended June 30, 2004

OR

       [   ]     Transition Report Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934

                 For the transition period from                                     to                                    

Commission File Number:  0-23357


BIOANALYTICAL SYSTEMS, INC.
(Exact name of registrant as specified in its charter)

INDIANA 35-1345024
(State or other jurisdiction of
incorporation or organization)
(IRS Employer Identification No.)

2701 Kent Avenue
West Lafayette, IN

47906
(Address of principal executive offices) (Zip Code)
(765) 463-4527
(Registrant's telephone number,
including area code)

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.      Yes [X]     No [   ]

Indicate by check mark whether the registrant is an accelerated filer (as defined in Rule 12b-2 of the Exchange Act).      Yes [   ]     No [X]

         As of July 31, 2004, 4,869,502, common shares of the registrant were outstanding.





–  1  –

PART 1 FINANCIAL INFORMATION  

Item 1 Condensed Consolidated Financial Statements (Unaudited):

Condensed Consolidated Balance Sheets as of June 30, 2004 and
September 30, 2003
3

Condensed Consolidated Statements of Operations for the
Three Months and Nine Months Ended June 30, 2004 and 2003
4

Condensed Consolidated Statements of Cash Flows for the
Nine Months Ended June 30, 2004 and 2003
5

Notes to Condensed Consolidated Financial Statements 6

Item 2 Management's Discussion and Analysis of Financial Condition and
Results of Operations
10

Item 3 Quantitative and Qualitative Disclosures About Market Risk 16

Item 4 Controls and Procedures 16


PART II OTHER INFORMATION  

Item 6 Exhibits and Reports on Form 8-K 17

SIGNATURES 18




–  2  –

PART I - FINANCIAL INFORMATION

CONDENSED CONSOLIDATED BALANCE SHEETS
(In thousands)


(Unaudited)
June 30, 2004

September 30,
2003

Assets                
Current assets:
   Cash and cash equivalents   $778    $1,378
    Accounts receivable  
     Trade    5,429    3,978  
     Grants    13    13  
     Unbilled revenues and other    1,085    954  
   Inventories    1,833    2,055  
   Deferred income taxes    465    465  
   Refundable income taxes    167    84  
   Prepaid expenses    589    397  


Total current assets    10,359    9,324  
 
Property and equipment, net    32,120    31,171  
Goodwill    1,659    984  
Intangible assets, net    2,259    2,778  
Debt issue costs    379    428  
Other assets    307    300  


Total assets   $ 47,083   $ 44,985  


 
Liabilities and shareholders' equity  
Current liabilities:  
   Accounts payable   $ 3,157   $ 3,073  
   Accrued expenses    995    1,245  
   Customer advances    2,470    1,658  
   Revolving line of credit    3,109    2,388  
   Current portion of capital lease obligation    120    123  
   Current portion of long-term debt    788    1,132  


Total current liabilities    10,639    9,619  
 
Capital lease obligation, less current portion    101    ---  
Long-term debt, less current portion    9,007    6,949  
Construction line of credit    ---    1,676  
Subordinated debt, long-term    5,231    5,188  
Deferred income taxes    2,251    1,827  
 
Shareholders' equity:  
   Preferred shares: Authorized shares - 1,000,  
   Issued and outstanding shares - none    ---    ---  
   Common shares, no par value: Authorized shares - 19,000,  
   Issued and outstanding shares - 4,870 at June 30, 2004  
     and 4,831 at September 30, 2003    1,177    1,168  
Additional paid-in capital    11,263    11,122  
Retained earnings    7,500    7,498  
Accumulated other comprehensive loss    (86 )  (62 )


Total shareholders' equity    19,854    19,726  


Total liabilities and shareholders' equity   $ 47,083   $ 44,985  


See accompanying notes to condensed consolidated financial statements.




–  3  –

CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS
(In thousands, except per share amounts)
(Unaudited)


Three Months Ended
June 30,

Nine Months Ended
June 30,

2004
2003
2004
2003
Service revenue     $ 7,684   $ 5,643   $ 19,270   $ 14,739  
Product revenue    2,948    2,231    8,789    7,059  




   Total revenue    10,632    7,874    28,059    21,798  
 
Cost of service revenue    5,217    3,864    15,493    10,840  
Cost of product revenue    1,191    858    3,503    2,864  




   Total cost of revenue    6,408    4,722    18,996    13,704  
 
Gross profit    4,224    3,152    9,063    8,094  
 
Operating expenses:  
Selling    672    557    1,963    2,199  
Research and development    260    305    801    996  
General and administrative    2,054    1,436    5,686    3,723  




   Total operating expenses    2,986    2,298    8,450    6,918  
 
Operating income    1,238    854    613    1,176  
 
Interest income    2    1    5    3  
Interest expense    (306 )  (148 )  (720 )  (396 )
Other income    21    20    39    79  
 
Gain (loss) on sale of property and equipment    (10 )  49    (10 )  81  




 
Income (loss) before income taxes    945    776    (73 )  943  
 
Income tax provision (benefit)    310    422    (75 )  481  




Net income   $ 635   $ 354   $ 2   $ 462  




 
Net income per share:  
   Basic   $ 0.13   $ 0.08   $ 0.00   $ 0.10  
   Diluted   $ 0.13   $ 0.08   $ 0.00   $ 0.10  
 
Weighted common and common equivalent  
shares outstanding:  
   Basic    4,870    4,605    4,857    4,595  
   Diluted    5,150    4,609    4,866    4,616  

See accompanying notes to condensed consolidated financial statements.




–  4  –

CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS
(In thousands)
(Unaudited)


Nine Months Ended June 30,
2004
2003
Operating activities            
Net income   $ 2   $ 462  
Adjustments to reconcile net income to net  
cash provided by operating activities:  
   Depreciation and amortization    2,771    1,783  
   (Gain) loss on sale of property and equipment    10    (81 )
    Interest on subordinated debt    193    ---  
   Deferred income taxes    ---    242  
   Changes in operating assets and liabilities:  
     Accounts receivable    (1,582 )  605  
     Inventories    222    255  
     Prepaid expenses and other assets    (199 )  153  
     Accounts payable    84    (476 )
     Income taxes    (261 )  (92 )
     Accrued expenses    (1,355 )  1  
     Customer advances    812    (141 )


Net cash provided by operating activities    697    2,711  
 
Investing activities  
Capital expenditures    (2,029 )  (4,077 )
Proceeds from sale of property and equipment    ---    1,023  
Payments for purchase of LC Resources, Inc. net of cash acquired    ---    (163 )
Payments for purchase of PharmaKinetics Laboratories, Inc., net of cash acquired    ---    (816 )


Net cash used by investing activities    (2,029 )  (4,033 )
 
Financing activities  
Borrowings on line of credit    9,629    3,826  
Payments on line of credit    (8,908 )  (5,955 )
Borrowings on construction line of credit    574    3,343  
Payments on capital lease obligations    (3 )  (1,071 )
Borrowings of long-term debt, net of issuance costs    2,250    4,950  
Payments of long-term debt    (2,786 )  (3,658 )
Net proceeds from the exercise of stock options    ---    39  


Net cash provided by financing activities    756    1,474  
 
Effects of exchange rate changes    (24 )  (6 )


 
Net increase (decrease) in cash and cash equivalents    (600 )  146  
Cash and cash equivalents at beginning of period    1,378    826  


Cash and cash equivalents at end of period   $ 778   $ 972  


See accompanying notes to condensed consolidated financial statements.




–  5  –

BIOANALYTICAL SYSTEMS, INC. AND SUBSIDIARIES
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS
(Unaudited)

1.        Description of the Business and Basis of Presentation

Bioanalytical Systems, Inc. and its subsidiaries (“We,” the “Company” or “BASi”) engage in laboratory services and other services related to pharmaceutical development. We also manufacture scientific instruments for medical research, which we sell with related software for use in industrial, governmental and academic laboratories. Our customers are located throughout the world.

We have prepared the accompanying unaudited interim condensed consolidated financial statements pursuant to the rules and regulations of the Securities and Exchange Commission (“SEC”) regarding interim financial reporting. Accordingly, they do not include all of the information and footnotes required by accounting principles generally accepted in the United States (“GAAP”), and therefore should be read in conjunction with our audited consolidated financial statements, and the notes thereto, included in our Form 10-K for the year ended September 30, 2003. In the opinion of management, the condensed consolidated financial statements for the three and nine months ended June 30, 2004 and 2003 include all adjustments which are necessary for a fair presentation of the results of the interim periods and of our financial position at June 30, 2004. The results of operations for the three and nine months ended June 30, 2004 are not necessarily indicative of the results for the year ending September 30, 2004.

All amounts in the condensed consolidated financial statements and the notes thereto are presented in thousands, except for per share data or where otherwise noted.

2.         Stock Based Compensation

At June 30, 2004, we had four stock-based employee compensation plans, which are described more fully in Note 9 in the Notes to the Consolidated Financial Statements in our Form 10-K for the year ended September 30, 2003. Because all options granted under these plans had an exercise price equal to the market value of the underlying common stock on the date of grant, we do not recognize any stock-based employee compensation cost in our financial statements. The following table illustrates the effect on net income (loss) and earnings (loss) per share had we applied the alternative fair value treatment of recognizing as stock-based employee compensation.

Three Months Ended
June 30,

Nine Months Ended
June 30,

2004
2003
2004
2003
Net income as reported     $ 635   $ 354   $ 2   $ 462  
Deduct: Total stock-based employee  
compensation expense determined under  
the fair value based method for all  
awards, net of related tax effects    (49 )  (5 )  (67 )  (15 )




Pro forma net income (loss)   $ 586   $ 349   $ (65 ) $ 447  




Earnings (loss) per share:  
   Basic - as reported   $ 0.13 $ 0.08 $ 0.00 $ 0.10
   Basic - pro forma   $ 0.12 $ 0.08 $ (0.01 )  $0.10
   Diluted-as reported   $ 0.13 $ 0.08 $ 0.00 $ 0.10
   Diluted--pro forma   $ 0.12 $ 0.08 $ (0.01